ASB13 protein (Ornithorhynchus anatinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASB13

Ankyrin repeat and SOCS box containing 13. (281 aa)

Predicted Functional Partners:

ASB7

0.753

ELOC

0.707

CUL5

0.628

ELOB

0.621

KLHL20

0.603

COMMD8

0.576

COMMD1

0.566

COMMD2

0.561

COMMD4

0.558

COMMD9

0.550

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB13	ASB7	ENSOANP00000024337	ENSOANP00000009532	Ankyrin repeat and SOCS box containing 13.	Ankyrin repeat and SOCS box containing 7.	0.753
ASB13	COMMD1	ENSOANP00000024337	ENSOANP00000019654	Ankyrin repeat and SOCS box containing 13.	Copper metabolism domain containing 1.	0.566
ASB13	COMMD2	ENSOANP00000024337	ENSOANP00000014448	Ankyrin repeat and SOCS box containing 13.	COMM domain-containing protein.	0.561
ASB13	COMMD4	ENSOANP00000024337	ENSOANP00000019337	Ankyrin repeat and SOCS box containing 13.	COMM domain containing 4.	0.558
ASB13	COMMD8	ENSOANP00000024337	ENSOANP00000018731	Ankyrin repeat and SOCS box containing 13.	COMM domain containing 8.	0.576
ASB13	COMMD9	ENSOANP00000024337	ENSOANP00000018654	Ankyrin repeat and SOCS box containing 13.	COMM domain containing 9.	0.550
ASB13	CUL5	ENSOANP00000024337	ENSOANP00000016570	Ankyrin repeat and SOCS box containing 13.	Cullin 5; Belongs to the cullin family.	0.628
ASB13	ELOB	ENSOANP00000024337	ENSOANP00000021044	Ankyrin repeat and SOCS box containing 13.	Elongin B.	0.621
ASB13	ELOC	ENSOANP00000024337	ENSOANP00000010124	Ankyrin repeat and SOCS box containing 13.	Skp1_POZ domain-containing protein.	0.707
ASB13	KLHL20	ENSOANP00000024337	ENSOANP00000001433	Ankyrin repeat and SOCS box containing 13.	Kelch like family member 20.	0.603
ASB7	ASB13	ENSOANP00000009532	ENSOANP00000024337	Ankyrin repeat and SOCS box containing 7.	Ankyrin repeat and SOCS box containing 13.	0.753
ASB7	COMMD1	ENSOANP00000009532	ENSOANP00000019654	Ankyrin repeat and SOCS box containing 7.	Copper metabolism domain containing 1.	0.555
ASB7	COMMD2	ENSOANP00000009532	ENSOANP00000014448	Ankyrin repeat and SOCS box containing 7.	COMM domain-containing protein.	0.553
ASB7	COMMD4	ENSOANP00000009532	ENSOANP00000019337	Ankyrin repeat and SOCS box containing 7.	COMM domain containing 4.	0.561
ASB7	COMMD8	ENSOANP00000009532	ENSOANP00000018731	Ankyrin repeat and SOCS box containing 7.	COMM domain containing 8.	0.580
ASB7	COMMD9	ENSOANP00000009532	ENSOANP00000018654	Ankyrin repeat and SOCS box containing 7.	COMM domain containing 9.	0.553
ASB7	CUL5	ENSOANP00000009532	ENSOANP00000016570	Ankyrin repeat and SOCS box containing 7.	Cullin 5; Belongs to the cullin family.	0.771
ASB7	ELOB	ENSOANP00000009532	ENSOANP00000021044	Ankyrin repeat and SOCS box containing 7.	Elongin B.	0.438
ASB7	ELOC	ENSOANP00000009532	ENSOANP00000010124	Ankyrin repeat and SOCS box containing 7.	Skp1_POZ domain-containing protein.	0.558
ASB7	KLHL20	ENSOANP00000009532	ENSOANP00000001433	Ankyrin repeat and SOCS box containing 7.	Kelch like family member 20.	0.634