PDRG1 protein (Ornithorhynchus anatinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDRG1

Uncharacterized protein. (79 aa)

Predicted Functional Partners:

UXT

0.880

F6U5Z9_ORNAN

0.878

PIH1D1

0.787

WDR92

0.747

PFDN4

0.721

RPAP3

0.706

F7EIL5_ORNAN

0.706

URI1

0.655

RUVBL1

0.651

ARL14EP

0.575

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL14EP	PDRG1	ENSOANP00000016983	ENSOANP00000025729	ADP ribosylation factor like GTPase 14 effector protein.	Uncharacterized protein.	0.575
F6U5Z9_ORNAN	F7EIL5_ORNAN	ENSOANP00000028702	ENSOANP00000026763	Uncharacterized protein.	Uncharacterized protein.	0.690
F6U5Z9_ORNAN	PDRG1	ENSOANP00000028702	ENSOANP00000025729	Uncharacterized protein.	Uncharacterized protein.	0.878
F6U5Z9_ORNAN	PFDN4	ENSOANP00000028702	ENSOANP00000014707	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.995
F6U5Z9_ORNAN	PIH1D1	ENSOANP00000028702	ENSOANP00000031721	Uncharacterized protein.	PIH1 domain-containing protein.	0.677
F6U5Z9_ORNAN	RPAP3	ENSOANP00000028702	ENSOANP00000025528	Uncharacterized protein.	RPAP3_C domain-containing protein.	0.690
F6U5Z9_ORNAN	RUVBL1	ENSOANP00000028702	ENSOANP00000014499	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.683
F6U5Z9_ORNAN	URI1	ENSOANP00000028702	ENSOANP00000004740	Uncharacterized protein.	URI1 prefoldin like chaperone.	0.870
F6U5Z9_ORNAN	UXT	ENSOANP00000028702	ENSOANP00000031454	Uncharacterized protein.	Uncharacterized protein.	0.879
F6U5Z9_ORNAN	WDR92	ENSOANP00000028702	ENSOANP00000013325	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.829
F7EIL5_ORNAN	F6U5Z9_ORNAN	ENSOANP00000026763	ENSOANP00000028702	Uncharacterized protein.	Uncharacterized protein.	0.690
F7EIL5_ORNAN	PDRG1	ENSOANP00000026763	ENSOANP00000025729	Uncharacterized protein.	Uncharacterized protein.	0.706
F7EIL5_ORNAN	PIH1D1	ENSOANP00000026763	ENSOANP00000031721	Uncharacterized protein.	PIH1 domain-containing protein.	0.915
F7EIL5_ORNAN	RPAP3	ENSOANP00000026763	ENSOANP00000025528	Uncharacterized protein.	RPAP3_C domain-containing protein.	0.900
F7EIL5_ORNAN	RUVBL1	ENSOANP00000026763	ENSOANP00000014499	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.967
F7EIL5_ORNAN	URI1	ENSOANP00000026763	ENSOANP00000004740	Uncharacterized protein.	URI1 prefoldin like chaperone.	0.633
F7EIL5_ORNAN	UXT	ENSOANP00000026763	ENSOANP00000031454	Uncharacterized protein.	Uncharacterized protein.	0.715
F7EIL5_ORNAN	WDR92	ENSOANP00000026763	ENSOANP00000013325	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.806
PDRG1	ARL14EP	ENSOANP00000025729	ENSOANP00000016983	Uncharacterized protein.	ADP ribosylation factor like GTPase 14 effector protein.	0.575
PDRG1	F6U5Z9_ORNAN	ENSOANP00000025729	ENSOANP00000028702	Uncharacterized protein.	Uncharacterized protein.	0.878