STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A3-2VWFA domain-containing protein. (121 aa)    
Predicted Functional Partners:
K7E8Y6_ORNAN
Fibronectin type-III domain-containing protein.
 
     0.918
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.901
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.742
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.714
ITGA5
Integrin_alpha2 domain-containing protein.
    
 0.709
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
   
 0.708
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.700
ITGA3
Uncharacterized protein.
   
 0.695
ITGB4
Uncharacterized protein.
    
 0.695
ITGA8
Integrin subunit alpha 8; Belongs to the integrin alpha chain family.
    
 0.694
Your Current Organism:
Ornithorhynchus anatinus
NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus
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