STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002025725_00447Unannotated protein. (298 aa)    
Predicted Functional Partners:
GCA_002025725_04169
Unannotated protein.
  
     0.738
GCA_002025725_01712
Unannotated protein.
  
     0.712
GCA_002025725_01982
Unannotated protein.
  
     0.707
GCA_002025725_01959
Unannotated protein.
  
     0.684
GCA_002025725_01835
Unannotated protein.
  
     0.638
GCA_002025725_03780
Unannotated protein.
  
     0.587
GCA_002025725_00445
Unannotated protein.
       0.541
GCA_002025725_00446
Unannotated protein.
       0.541
GCA_002025725_03243
Unannotated protein.
  
     0.510
GCA_002025725_03539
Unannotated protein.
  
     0.505
Your Current Organism:
Herbaspirillum frisingense
NCBI taxonomy Id: 92645
Other names: CCUG 47444, DSM 13128, H. frisingense, Herbaspirillum frisingense Kirchhof et al. 2001, Herbispirillum frisingense, JCM 21445, NBRC 102522, strain GSF30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.