STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002025725_04773Unannotated protein. (191 aa)    
Predicted Functional Partners:
GCA_002025725_04774
Unannotated protein.
       0.800
GCA_002025725_04775
Unannotated protein.
       0.800
GCA_002025725_04776
Unannotated protein.
       0.790
GCA_002025725_04777
Unannotated protein.
       0.790
GCA_002025725_04778
Unannotated protein.
       0.790
GCA_002025725_04779
Unannotated protein.
       0.790
GCA_002025725_04772
Unannotated protein.
       0.783
GCA_002025725_04780
Unannotated protein.
       0.762
GCA_002025725_04770
Unannotated protein.
       0.520
GCA_002025725_04771
Unannotated protein.
       0.519
Your Current Organism:
Herbaspirillum frisingense
NCBI taxonomy Id: 92645
Other names: CCUG 47444, DSM 13128, H. frisingense, Herbaspirillum frisingense Kirchhof et al. 2001, Herbispirillum frisingense, JCM 21445, NBRC 102522, strain GSF30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.