STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ46722.1Choline dehydrogenase. (543 aa)    
Predicted Functional Partners:
SEK05049.1
Cytochrome c, mono-and diheme variants.
   
 0.974
SEJ83486.1
Hypothetical protein.
    
 0.839
SEK06731.1
Hypothetical protein.
    
 0.839
SEK15025.1
Ankyrin repeat-containing protein.
    
 0.839
SEK09103.1
Cytochrome P450.
    
 0.766
SEK12525.1
Membrane bound FAD containing D-sorbitol dehydrogenase.
   
   0.743
SEJ68603.1
Cytochrome c.
   
 
 0.712
SEJ03080.1
NAD(P)H-flavin reductase.
    
 0.615
SEJ40316.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
    
 0.615
SEJ45473.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.615
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.