STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK04859.1Uncharacterized alpha/beta hydrolase domain. (753 aa)    
Predicted Functional Partners:
SEK04885.1
Type VI secretion system protein ImpA.
 
     0.704
SEJ59275.1
Iron complex outermembrane recepter protein.
  
     0.681
SEK15461.1
Conserved hypothetical protein.
  
     0.680
SEK04938.1
Hypothetical protein.
 
     0.669
SEK02715.1
Transcriptional regulator, ArsR family.
  
     0.663
SEK04844.1
Type VI secretion system protein ImpM.
  
     0.661
SEK07538.1
3-O-methylgallate 3,4-dioxygenase.
  
     0.660
SEK04898.1
Type VI secretion system protein ImpH.
 
     0.651
SEJ66910.1
Outer membrane autotransporter barrel domain-containing protein.
  
     0.649
SEK07527.1
Outer membrane protein (porin).
  
     0.645
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.