STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK10086.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
SEK10088.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.807
SEK02346.1
Hypothetical protein.
  
    0.726
SEK10083.1
Phenylpropionate dioxygenase, large terminal subunit.
  
    0.691
SEK10081.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.690
SEK10079.1
Cupin domain-containing protein.
       0.542
SEK10059.1
Catechol-2,3-dioxygenase.
  
    0.514
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
       0.495
SEK10076.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.457
SEK10069.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
       0.447
SEK10071.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.436
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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