STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK11199.1Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. (196 aa)    
Predicted Functional Partners:
SEK11204.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
     0.902
SEK11208.1
Cytochrome b561.
 
  
 0.754
SEK07936.1
Cytochrome b561.
 
  
 0.503
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.497
SEK06312.1
Cytochrome b561.
 
  
 0.466
SEK11197.1
Hypothetical protein.
       0.431
SEK07700.1
Cytochrome b561.
 
  
 0.422
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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