Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
loading ...
currently showing
Fusion
Genes that are sometimes fused into single open reading frames.
loading ...
currently showing
Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
loading ...
currently showing
Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK14023.1
Hypothetical protein. (68 aa)
Predicted Functional Partners:
ligD
Bifunctional non-homologous end joining protein LigD.
0.773
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647 Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8