STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK14157.1Putative Holin-X, holin superfamily III. (124 aa)    
Predicted Functional Partners:
SEK14158.1
Hypothetical protein.
       0.773
SEK08358.1
Protein of unknown function.
  
    0.709
SEK13546.1
Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.
  
  
 0.650
SEK08349.1
Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.
  
  
 0.649
SEK14156.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
    0.638
coq7
Ubiquinone biosynthesis monooxygenase Coq7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
    0.511
SEJ82907.1
Hypothetical protein; Belongs to the UPF0229 family.
   
    0.452
SEK14160.1
Hypothetical protein.
  
    0.447
SEK14162.1
Nodulation protein S (NodS).
  
    0.423
SEJ82924.1
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.
   
    0.416
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.