STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK15548.1Transcriptional regulator, AraC family. (306 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.629
SEK13542.1
Glutamate synthase (NADH) large subunit.
    
  0.615
SEK07538.1
3-O-methylgallate 3,4-dioxygenase.
  
     0.530
SEJ83243.1
PAS/PAC sensor hybrid histidine kinase.
 
  
 0.528
SEJ62051.1
Protocatechuate 4,5-dioxygenase beta subunit.
  
     0.508
SEK09731.1
Transcriptional regulator, AraC family with amidase-like domain.
  
 
   0.502
SEJ06846.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
 
   0.493
SEJ98797.1
AraC-type DNA-binding protein.
  
     0.492
SEI83168.1
Transcriptional regulator, AraC family.
  
     0.489
SEK12163.1
Transcriptional regulator, AraC family.
  
     0.480
Your Current Organism:
Paraburkholderia tropica
NCBI taxonomy Id: 92647
Other names: ATCC BAA-831, Burkholderia tropica, Burkholderia tropica Reis et al. 2004, DSM 15359, LMG 22274, LMG:22274, P. tropica, Paraburkholderia tropica (Reis et al. 2004) Sawana et al. 2015, strain Ppe8
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