STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM00487.1Putative ABC transporter substrate binding protein. (470 aa)    
Predicted Functional Partners:
BAM00489.1
Putative ABC transporter permease protein.
 
   0.898
BAM00488.1
Putative ABC transporter permease protein.
 
   0.891
BAL99368.1
Putative ABC transporter permease protein.
 
   0.812
BAM00673.1
Hypothetical protein.
  
     0.765
BAM00281.1
Putative ABC transporter substrate binding protein.
  
     0.752
BAM01378.1
Putative serine/threonine protein kinase.
  
     0.690
BAL99367.1
Hypothetical protein.
  
    0.680
BAL99224.1
Hypothetical protein.
  
     0.677
BAL99867.1
Putative ABC transporter substrate binding protein.
  
     0.660
BAM00286.1
Hypothetical protein.
  
     0.639
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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