STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB-13Xylulose kinase; Belongs to the FGGY kinase family. (512 aa)    
Predicted Functional Partners:
BAL99398.1
Putative sorbitol dehydrogenase.
  
 
  0.905
BAM01329.1
Putative inositol 2-dehydrogenase.
  
    0.786
BAM00522.1
Hypothetical protein.
  
 
 0.719
BAM00864.1
Putative L-ribulose-5-phosphate 4-epimerase.
 
 
 0.719
rpe
Ribulose-phosphate 3-epimerase.
 
  
 0.677
rpe-2
Ribulose-phosphate 3-epimerase.
    
 0.677
rpe-3
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.677
BAM01328.1
Putative sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.545
BAL98780.1
Hypothetical protein.
   
 
  0.510
BAL99770.1
Hypothetical protein.
   
 
  0.510
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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