BAM01715.1 protein (Caldilinea aerophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAM01715.1

Hypothetical protein. (370 aa)

Predicted Functional Partners:

BAM01378.1

0.684

BAM00281.1

0.624

BAM01716.1

0.554

BAM01717.1

0.512

BAM01714.1

0.489

BAM00460.1

0.486

BAL99312.1

0.469

BAL99986.1

0.455

BAM01167.1

0.445

ramA

0.440

Your Current Organism:

Caldilinea aerophila

NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAL99312.1	BAM01715.1	CLDAP_12730	CLDAP_36750	Hypothetical protein.	Hypothetical protein.	0.469
BAL99986.1	BAM01715.1	CLDAP_19470	CLDAP_36750	Putative LuxR family transcriptional regulator.	Hypothetical protein.	0.455
BAM00281.1	BAM01167.1	CLDAP_22410	CLDAP_31270	Putative ABC transporter substrate binding protein.	Hypothetical protein.	0.639
BAM00281.1	BAM01378.1	CLDAP_22410	CLDAP_33380	Putative ABC transporter substrate binding protein.	Putative serine/threonine protein kinase.	0.678
BAM00281.1	BAM01715.1	CLDAP_22410	CLDAP_36750	Putative ABC transporter substrate binding protein.	Hypothetical protein.	0.624
BAM00460.1	BAM01715.1	CLDAP_24200	CLDAP_36750	Putative dioxygenase.	Hypothetical protein.	0.486
BAM00460.1	ramA	CLDAP_24200	CLDAP_39130	Putative dioxygenase.	alpha-L-rhamnosidase.	0.563
BAM01167.1	BAM00281.1	CLDAP_31270	CLDAP_22410	Hypothetical protein.	Putative ABC transporter substrate binding protein.	0.639
BAM01167.1	BAM01378.1	CLDAP_31270	CLDAP_33380	Hypothetical protein.	Putative serine/threonine protein kinase.	0.555
BAM01167.1	BAM01715.1	CLDAP_31270	CLDAP_36750	Hypothetical protein.	Hypothetical protein.	0.445
BAM01378.1	BAM00281.1	CLDAP_33380	CLDAP_22410	Putative serine/threonine protein kinase.	Putative ABC transporter substrate binding protein.	0.678
BAM01378.1	BAM01167.1	CLDAP_33380	CLDAP_31270	Putative serine/threonine protein kinase.	Hypothetical protein.	0.555
BAM01378.1	BAM01715.1	CLDAP_33380	CLDAP_36750	Putative serine/threonine protein kinase.	Hypothetical protein.	0.684
BAM01714.1	BAM01715.1	CLDAP_36740	CLDAP_36750	Putative fatty acid-CoA racemase; Belongs to the CoA-transferase III family.	Hypothetical protein.	0.489
BAM01714.1	BAM01716.1	CLDAP_36740	CLDAP_36760	Putative fatty acid-CoA racemase; Belongs to the CoA-transferase III family.	Putative MaoC-like dehydratase.	0.601
BAM01715.1	BAL99312.1	CLDAP_36750	CLDAP_12730	Hypothetical protein.	Hypothetical protein.	0.469
BAM01715.1	BAL99986.1	CLDAP_36750	CLDAP_19470	Hypothetical protein.	Putative LuxR family transcriptional regulator.	0.455
BAM01715.1	BAM00281.1	CLDAP_36750	CLDAP_22410	Hypothetical protein.	Putative ABC transporter substrate binding protein.	0.624
BAM01715.1	BAM00460.1	CLDAP_36750	CLDAP_24200	Hypothetical protein.	Putative dioxygenase.	0.486
BAM01715.1	BAM01167.1	CLDAP_36750	CLDAP_31270	Hypothetical protein.	Hypothetical protein.	0.445

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.697

expected number of edges:

20

PPI enrichment p-value:

0.0273

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 291

1.77

4.68

1.53e-16

GO:0032543

Mitochondrial translation

4 of 44

2.15

2.72

3.24e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 161

2.02

6.66

1.19e-19

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005761

Mitochondrial ribosome

11 of 63

2.43

10.19

3.69e-24

GO:0005762

Mitochondrial large ribosomal subunit

7 of 36

2.48

6.72

1.42e-14

GO:0044391

Ribosomal subunit

10 of 144

2.03

6.33

4.58e-18

GO:0098798

Mitochondrial protein-containing complex

10 of 173

1.95

5.77

2.25e-17

GO:0005763

Mitochondrial small ribosomal subunit

3 of 24

2.29

2.38

2.53e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8399

Organellar ribosome

11 of 44

2.59

11.36

2.64e-25

CL:8469

Mixed, incl. Ribosomal protein L23, and Ribosomal protein L30p/L7e

5 of 6

3.11

6.4

1.58e-12

CL:8400

Organellar ribosome

6 of 34

2.44

5.58

4.39e-12

CL:8405

Organellar large ribosomal subunit

4 of 15

2.62

3.97

2.95e-08

CL:8409

Mixed, incl. Ribosomal protein L6, and Ribosomal protein L2

2 of 5

2.79

1.76

0.00062

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

8 of 178

1.84

4.14

4.10e-12

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72766

Translation

11 of 274

1.79

4.95

2.18e-17

MAP-392499

Metabolism of proteins

11 of 1159

1.17

1.74

7.07e-11

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005761

Mitochondrial ribosome

11 of 62

2.44

10.22

3.88e-24

GOCC:0005762

Mitochondrial large ribosomal subunit

8 of 35

2.55

8.09

1.86e-17

GOCC:0044391

Ribosomal subunit

11 of 145

2.07

7.21

6.34e-21

GOCC:0098798

Mitochondrial protein complex

11 of 154

2.04

7.01

9.59e-21

GOCC:0005763

Mitochondrial small ribosomal subunit

3 of 27

2.24

2.3

3.39e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

5 of 107

1.86

2.61

1.17e-06

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