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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM01753.1Putative LysR family transcriptional regulator. (455 aa)    
Predicted Functional Partners:
BAM01133.1
Putative two-component hybrid sensor and regulator.
  
 
 0.870
BAM00595.1
Putative two-component histidine kinase.
 
 
 0.842
BAL98393.1
Putative two-component hybrid sensor and regulator.
  
 
 0.836
BAM00141.1
Putative two-component histidine kinase.
 
 
 0.836
BAM00895.1
Putative two-component histidine kinase.
 
 
 0.803
BAM01093.1
Putative two-component histidine kinase.
 
 
 0.742
BAM01752.1
Putative alkaline phosphatase.
       0.737
BAL98884.1
Putative two-component histidine kinase.
 
 
 0.726
BAM00930.1
Putative two-component histidine kinase.
 
 
 0.718
BAL99053.1
Putative two-component histidine kinase.
 
 
 0.710
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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