STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM01805.1Putative oxidoreductase. (300 aa)    
Predicted Functional Partners:
cofD
LPPG--FO 2-phopspho-L-lactate transferase.
 
   
 0.785
BAL99204.1
Putative F420-0--gamma-glutamyl ligase.
 
   
 0.777
BAM01100.1
Putative F420-0--gamma-glutamyl ligase.
 
   
 0.766
BAM01887.1
Putative oxidoreductase.
  
     0.745
fbiD
Hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.739
BAM01293.1
Putative oxidoreductase.
 
   
 0.725
BAL98837.1
Putative F420-dependent oxidoreductase.
  
     0.721
BAL99206.1
Hypothetical protein.
  
   
 0.642
BAM00696.1
Putative ABC transporter permease protein.
  
   
 0.585
BAL98383.1
Hypothetical protein.
  
     0.548
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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