STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAM01880.1Putative glycosyltransferase. (403 aa)    
Predicted Functional Partners:
BAM01673.1
Hypothetical protein.
 
  
 0.905
BAM00912.1
Putative deacetylase.
 
  
 0.726
BAL98383.1
Hypothetical protein.
  
     0.719
BAL98382.1
Hypothetical protein.
  
     0.694
BAL98395.1
Putative deacetylase.
 
  
 0.676
BAM01599.1
Putative deacetylase.
 
  
 0.663
BAM01881.1
Hypothetical protein.
 
  
 0.601
BAL98384.1
Putative mannose-1-phosphate guanyltransferase.
 
 
 0.471
BAM00306.1
Putative extracellular serine protease.
   
 0.468
BAL98664.1
Putative major facilitator superfamily transporter.
  
     0.465
Your Current Organism:
Caldilinea aerophila
NCBI taxonomy Id: 926550
Other names: C. aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila DSM 14535, Caldilinea aerophila DSM 14535 = NBRC 104270, Caldilinea aerophila NBRC 104270, Caldilinea aerophila NBRC 104270 = DSM 14535, Caldilinea aerophila STL-6-O1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.