AGA78613.1 protein (Echinicola vietnamensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGA78613.1

PFAM: Response regulator receiver domain. (131 aa)

Predicted Functional Partners:

corA

0.780

AGA80745.1

0.644

AGA79864.1

0.642

AGA78519.1

0.567

AGA77443.1

0.531

AGA80440.1

0.520

AGA78692.1

0.519

AGA80824.1

0.506

AGA78518.1

0.495

AGA78691.1

0.486

Your Current Organism:

Echinicola vietnamensis

NCBI taxonomy Id: 926556
Other names: E. vietnamensis DSM 17526, Echinicola vietnamensis DSM 17526

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGA77443.1	AGA78519.1	Echvi_1172	Echvi_2271	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	0.595
AGA77443.1	AGA78613.1	Echvi_1172	Echvi_2365	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PFAM: Response regulator receiver domain.	0.531
AGA77443.1	AGA78691.1	Echvi_1172	Echvi_2444	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	Putative cysteine protease (OTU family); PFAM: VWA N-terminal; Cache domain.	0.520
AGA77443.1	AGA78692.1	Echvi_1172	Echvi_2445	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.824
AGA77443.1	AGA79864.1	Echvi_1172	Echvi_3649	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.872
AGA77443.1	AGA80440.1	Echvi_1172	Echvi_4245	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.	0.587
AGA77443.1	AGA80745.1	Echvi_1172	Echvi_4572	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.807
AGA77443.1	AGA80824.1	Echvi_1172	Echvi_4657	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	0.666
AGA78518.1	AGA78519.1	Echvi_2270	Echvi_2271	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	0.887
AGA78518.1	AGA78613.1	Echvi_2270	Echvi_2365	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PFAM: Response regulator receiver domain.	0.495
AGA78518.1	AGA78691.1	Echvi_2270	Echvi_2444	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	Putative cysteine protease (OTU family); PFAM: VWA N-terminal; Cache domain.	0.508
AGA78518.1	AGA78692.1	Echvi_2270	Echvi_2445	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.631
AGA78518.1	AGA79864.1	Echvi_2270	Echvi_3649	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.746
AGA78518.1	AGA80440.1	Echvi_2270	Echvi_4245	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.	0.497
AGA78518.1	AGA80745.1	Echvi_2270	Echvi_4572	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.	0.666
AGA78518.1	AGA80824.1	Echvi_2270	Echvi_4657	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	0.611
AGA78519.1	AGA77443.1	Echvi_2271	Echvi_1172	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.	0.595
AGA78519.1	AGA78518.1	Echvi_2271	Echvi_2270	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	Histidine kinase,7TM-containing protein possibly involved in signal transduction,histidine kinase; PFAM: 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.	0.887
AGA78519.1	AGA78613.1	Echvi_2271	Echvi_2365	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	PFAM: Response regulator receiver domain.	0.567
AGA78519.1	AGA78691.1	Echvi_2271	Echvi_2444	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain.	Putative cysteine protease (OTU family); PFAM: VWA N-terminal; Cache domain.	0.615