STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ37215.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
EIJ37216.1
Hypothetical protein.
 
    0.835
EIJ37217.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.816
EIJ39796.1
PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
    
 0.704
EIJ37948.1
PFAM: Protein of unknown function (DUF1239).
  
     0.590
EIJ39253.1
Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.528
EIJ39719.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.
     
 0.498
EIJ39247.1
Hypothetical protein.
  
     0.493
EIJ38068.1
PFAM: Divergent AAA domain.
  
     0.477
EIJ39145.1
Hypothetical protein.
  
     0.450
EIJ39125.1
Outer membrane receptor protein; PFAM: TonB dependent receptor.
  
     0.427
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.