STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (238 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.983
EIJ37302.1
Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein.
  
    0.728
EIJ38007.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2141).
  
     0.714
EIJ38031.1
DnaK suppressor protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger.
 
    0.687
EIJ38494.1
PFAM: Protein of unknown function (DUF3109).
  
 
   0.646
EIJ37154.1
Hypothetical protein.
  
     0.637
EIJ40140.1
PFAM: RNA polymerase Rpb6.
 
    0.622
EIJ38720.1
Hypothetical protein.
  
   
 0.576
EIJ40207.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N).
 
     0.576
EIJ38912.1
Zn-ribbon protein; Possibly nucleic acid-binding; PFAM: Putative zinc ribbon domain.
  
     0.572
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.