STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ39116.1PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor. (785 aa)    
Predicted Functional Partners:
EIJ37378.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.767
EIJ37410.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.744
EIJ39588.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.736
EIJ39039.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.733
EIJ40657.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.716
EIJ38533.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.705
EIJ40085.1
Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein.
 
 
 0.701
EIJ37278.1
Putative iron-regulated membrane protein; PFAM: PepSY-associated TM helix.
 
  
 0.654
EIJ39117.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
     0.634
EIJ39114.1
ABC-type Co2+ transport system, periplasmic component; PFAM: Nickel uptake substrate-specific transmembrane region.
 
    0.624
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.