STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ39156.1PFAM: Protein of unknown function (DUF3276). (128 aa)    
Predicted Functional Partners:
EIJ37154.1
Hypothetical protein.
  
     0.761
EIJ38053.1
Hypothetical protein.
  
     0.736
EIJ38302.1
PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.727
EIJ40481.1
PFAM: Acyl-CoA reductase (LuxC).
  
     0.680
EIJ39157.1
ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.
       0.664
EIJ38825.1
PFAM: GH3 auxin-responsive promoter.
  
     0.650
EIJ39018.1
TIGRFAM: gliding motility-associated lipoprotein GldB.
  
     0.644
EIJ40140.1
PFAM: RNA polymerase Rpb6.
  
     0.631
EIJ39033.1
Hypothetical protein.
  
     0.615
argS
arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
  
     0.608
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
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