STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ39464.1Hypothetical protein. (209 aa)    
Predicted Functional Partners:
EIJ37435.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
   
 
 0.591
EIJ40496.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
   
 
 0.591
EIJ37683.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.574
EIJ37359.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.569
EIJ38329.1
PFAM: Outer membrane protein (OmpH-like).
    
 
 0.542
EIJ38842.1
PFAM: Outer membrane protein (OmpH-like).
    
 
 0.542
EIJ38843.1
PFAM: Outer membrane protein (OmpH-like).
    
 
 0.542
EIJ40698.1
RagB/SusD family protein; PFAM: SusD family.
  
    0.523
EIJ40117.1
PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family.
    
 
 0.509
EIJ39528.1
RagB/SusD family protein; PFAM: SusD family.
  
    0.503
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.