STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIJ40531.1PFAM: Carboxylesterase; Belongs to the type-B carboxylesterase/lipase family. (530 aa)    
Predicted Functional Partners:
rpsD
Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.918
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.896
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.888
EIJ40530.1
Hypothetical protein.
 
 
 0.856
EIJ38718.1
PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase.
     
 0.743
EIJ40532.1
Hypothetical protein.
 
     0.721
EIJ40535.1
Hypothetical protein; PFAM: Cupin domain.
      0.718
EIJ39994.1
PFAM: Prolyl oligopeptidase family; Putative esterase.
      0.711
EIJ40529.1
Flavodoxin.
 
     0.703
EIJ40537.1
Alpha/beta superfamily hydrolase; PFAM: Dienelactone hydrolase family.
 
 
 
 0.672
Your Current Organism:
Joostella marina
NCBI taxonomy Id: 926559
Other names: J. marina DSM 19592, Joostella marina DSM 19592, Joostella marina En5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.