STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7959_1436Unannotated protein; Belongs to the flavin oxidoreductase frp family. (246 aa)    
Predicted Functional Partners:
C7959_11331
Unannotated protein.
  
 
 0.730
C7959_1434
Unannotated protein.
 
  
  0.700
C7959_1435
Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.675
C7959_102137
Unannotated protein.
   
 
 0.656
birA
Unannotated protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.637
C7959_10839
Unannotated protein.
  
     0.578
C7959_101176
Unannotated protein; Belongs to the sulfur carrier protein TusA family.
    
 0.549
C7959_11351
Unannotated protein.
 
 
 0.546
C7959_1437
Unannotated protein.
  
    0.487
C7959_12720
Unannotated protein.
  
  
 0.485
Your Current Organism:
Orenia marismortui
NCBI taxonomy Id: 926561
Other names: O. marismortui DSM 5156, Orenia marismortui DSM 5156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.