STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps9p30S ribosomal protein S9p; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uS9 family. (156 aa)    
Predicted Functional Partners:
rpl18e
50S ribosomal protein L18e; Function of strongly homologous gene; structure.
  
 0.999
rpl32e
50S ribosomal protein L32e; Function of strongly homologous gene; structure; Belongs to the eukaryotic ribosomal protein eL32 family.
 
 0.999
rpl19e
50S ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
rpl13p
50S ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 0.999
rpl10e
50S ribosomal protein L10e; Function of strongly homologous gene; structure.
  
 0.999
rps15p
30S ribosomal protein S15p/S13e; Function of strongly homologous gene; structure.
  
 0.999
rps3ae
30S ribosomal protein S3ae; Function of strongly homologous gene; structure.
   
 0.999
rpl6p
50S ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 0.999
rps8p
30S ribosomal protein S8p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
  
 0.999
rps14p
30S ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.999
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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