Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIC14796.1 | AIC15407.1 | NVIE_005940 | NVIE_011740 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein. | 0.429 |
AIC14796.1 | aroGFH | NVIE_005940 | NVIE_005850 | Hypothetical protein; No homology to any previously reported sequences. | Putative 3-deoxy-7-phosphoheptulonate synthase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids. | 0.533 |
AIC14796.1 | lsrF | NVIE_005940 | NVIE_008540 | Hypothetical protein; No homology to any previously reported sequences. | Putative aldolase LsrF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. | 0.533 |
AIC15407.1 | AIC14796.1 | NVIE_011740 | NVIE_005940 | Hypothetical protein. | Hypothetical protein; No homology to any previously reported sequences. | 0.429 |
aroGFH | AIC14796.1 | NVIE_005850 | NVIE_005940 | Putative 3-deoxy-7-phosphoheptulonate synthase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids. | Hypothetical protein; No homology to any previously reported sequences. | 0.533 |
lsrF | AIC14796.1 | NVIE_008540 | NVIE_005940 | Putative aldolase LsrF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. | Hypothetical protein; No homology to any previously reported sequences. | 0.533 |