STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIC15206.1Putative transcriptional regulator, TrmB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (583 aa)    
Predicted Functional Partners:
AIC16819.1
Transcriptional regulator, TrmB.
  
     0.659
cdc6-3
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.579
AIC17121.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.564
flaB1
Archaeal flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
       0.544
rpl18e
50S ribosomal protein L18e; Function of strongly homologous gene; structure.
  
     0.521
AIC14968.1
Transcription regulator, TrmB.
  
     0.489
nusG
Putative transcription antitermination protein NusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
     0.447
dnaG
UPF0095 protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
     0.447
AIC15207.1
Putative Methyl-accepting chemotaxis sensory transducer; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
       0.447
AIC17123.1
Putative N6 adenine-specific DNA methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.446
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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