STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmB2Putative transcriptional regulator, TrmB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (283 aa)    
Predicted Functional Partners:
AIC16819.1
Transcriptional regulator, TrmB.
  
     0.664
AIC14968.1
Transcription regulator, TrmB.
  
     0.611
AIC15233.1
Hypothetical protein; No homology to any previously reported sequences.
       0.560
AIC17121.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.558
cdc6-4
Cell division control protein 6 family protein; Involved in regulation of DNA replication.
  
     0.541
cdc6-3
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.532
nusG
Putative transcription antitermination protein NusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
     0.502
polB
DNA polymerase II small subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.
  
     0.490
rpoE
DNA-directed RNA polymerase, subunit E``; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.
  
     0.476
AIC15058.1
Hypothetical protein.
  
     0.448
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.