STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appFPeptide/opine/nickel ABC uptake transporter, ATP-binding protein; Function of strongly homologous gene; transporter. (279 aa)    
Predicted Functional Partners:
dppC
Peptide/opine/nickel ABC uptake transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
 0.996
appB
Peptide/opine/nickel ABC uptake transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
 0.957
AIC15868.1
Peptide/opine/nickel ABC uptake transporter, substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.863
oppD
Peptide/opine/nickel ABC uptake transporter, putative ATP-binding protein; Function of strongly homologous gene; transporter.
 
   
0.833
srp54
Signal recognition particle SRP54 subunit protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
 
     0.636
AIC15864.1
Putative pseudouridylate synthase-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.553
AIC15866.1
Putative ATP binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.553
mntB
ABC uptake transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
    
0.471
AIC15863.1
Hypothetical protein; No homology to any previously reported sequences.
       0.458
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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