STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdc48-6AAA family ATPase, CDC48 subfamily protein; Function of strongly homologous gene; enzyme. (722 aa)    
Predicted Functional Partners:
csl4
Putative RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
  
   0.541
pheA
Putative prephenate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.519
hsp20-3
Heat-shock protein Hsp22; Function of strongly homologous gene; factor; Belongs to the small heat shock protein (HSP20) family.
 
  
 0.504
hsp20-4
Heat shock protein Hsp20; Function of strongly homologous gene; factor; Belongs to the small heat shock protein (HSP20) family.
 
  
 0.472
AIC16446.1
Putative histone deacetylase superfamily (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.436
lysA
Diaminopimelate decarboxylase LysA.
   
   0.433
arsA
Putative arsenical pump-driving ATPase ArsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.426
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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