STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps6e30S ribosomal protein S6e; Function of strongly homologous gene; structure; Belongs to the eukaryotic ribosomal protein eS6 family. (142 aa)    
Predicted Functional Partners:
rps9p
30S ribosomal protein S9p; Function of strongly homologous gene; structure; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
rpl18e
50S ribosomal protein L18e; Function of strongly homologous gene; structure.
  
 
 0.999
rpl32e
50S ribosomal protein L32e; Function of strongly homologous gene; structure; Belongs to the eukaryotic ribosomal protein eL32 family.
  
 
 0.999
rpl19e
50S ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 
 0.999
rps15p
30S ribosomal protein S15p/S13e; Function of strongly homologous gene; structure.
 
 0.999
rps3ae
30S ribosomal protein S3ae; Function of strongly homologous gene; structure.
  
 0.999
rps8p
30S ribosomal protein S8p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
 0.999
rps14p
30S ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.999
rps4e
30S ribosomal protein S4e; Function of strongly homologous gene; structure; Belongs to the eukaryotic ribosomal protein eS4 family.
  
 0.999
rps17p
30S ribosomal protein S17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 0.999
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.