STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdvCAAA-type ATPase domain-containing putative archaeal cell division protein Vps4 (cdvC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (411 aa)    
Predicted Functional Partners:
cdvA
Putative archaeal cell division protein CdvA with coiled-coil domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
     
 0.683
rpl2p
50S ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
 
   0.603
AIC16820.1
SNF7-domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
   
 0.602
AIC15050.1
Hypothetical protein.
  
 
 0.586
AIC16821.1
Hypothetical protein.
       0.533
dpo
DNA polymerase, family B; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 
 0.527
psmB1
Proteasome, subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
 0.526
ftsZ
Cell division protein FtsZ; Function of strongly homologous gene; cell process.
      
 0.520
AIC16055.1
Putative serine/threonine protein kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.516
rpl5p
50S ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
  
 
 0.513
Your Current Organism:
Nitrososphaera viennensis
NCBI taxonomy Id: 926571
Other names: Candidatus Nitrososphaera sp. EN76, N. viennensis EN76, Nitrososphaera viennensis EN76, Nitrososphaera viennensis str. EN76, Nitrososphaera viennensis strain EN76
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