EIP91_012320 protein (Steccherinum ochraceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EIP91_012320

CUE domain-containing protein. (352 aa)

Predicted Functional Partners:

EIP91_005884

0.948

UFD1

0.937

EIP91_010178

0.898

NPL4

0.876

HRD1

0.781

EIP91_010981

0.772

EIP91_002637

0.636

EMC3

0.635

EIP91_002291

0.566

EIP91_002877

0.566

Your Current Organism:

Steccherinum ochraceum

NCBI taxonomy Id: 92696
Other names: S. ochraceum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIP91_002291	EIP91_002637	A0A4R0RIR1	A0A4V2MXL5	TPR_REGION domain-containing protein.	EMC1_C domain-containing protein.	0.997
EIP91_002291	EIP91_012320	A0A4R0RIR1	A0A4R0RNC1	TPR_REGION domain-containing protein.	CUE domain-containing protein.	0.566
EIP91_002291	EMC3	A0A4R0RIR1	A0A4R0RV39	TPR_REGION domain-containing protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.997
EIP91_002637	EIP91_002291	A0A4V2MXL5	A0A4R0RIR1	EMC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.997
EIP91_002637	EIP91_012320	A0A4V2MXL5	A0A4R0RNC1	EMC1_C domain-containing protein.	CUE domain-containing protein.	0.636
EIP91_002637	EMC3	A0A4V2MXL5	A0A4R0RV39	EMC1_C domain-containing protein.	ER membrane protein complex subunit 3; The EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER). Belongs to the EMC3 family.	0.995
EIP91_002877	EIP91_005884	A0A4R0RPC2	A0A4R0R947	RING-type domain-containing protein.	UBX domain-containing protein.	0.872
EIP91_002877	EIP91_012320	A0A4R0RPC2	A0A4R0RNC1	RING-type domain-containing protein.	CUE domain-containing protein.	0.566
EIP91_002877	NPL4	A0A4R0RPC2	A0A4V2MX60	RING-type domain-containing protein.	Nuclear protein localization protein 4.	0.717
EIP91_002877	UFD1	A0A4R0RPC2	A0A4R0RJE7	RING-type domain-containing protein.	Ubiquitin fusion degradation protein.	0.679
EIP91_005884	EIP91_002877	A0A4R0R947	A0A4R0RPC2	UBX domain-containing protein.	RING-type domain-containing protein.	0.872
EIP91_005884	EIP91_010178	A0A4R0R947	A0A4V2MX40	UBX domain-containing protein.	Uncharacterized protein.	0.835
EIP91_005884	EIP91_012320	A0A4R0R947	A0A4R0RNC1	UBX domain-containing protein.	CUE domain-containing protein.	0.948
EIP91_005884	HRD1	A0A4R0R947	A0A4R0RGD6	UBX domain-containing protein.	E3 ubiquitin-protein ligase hrd1.	0.872
EIP91_005884	NPL4	A0A4R0R947	A0A4V2MX60	UBX domain-containing protein.	Nuclear protein localization protein 4.	0.949
EIP91_005884	UFD1	A0A4R0R947	A0A4R0RJE7	UBX domain-containing protein.	Ubiquitin fusion degradation protein.	0.961
EIP91_010178	EIP91_005884	A0A4V2MX40	A0A4R0R947	Uncharacterized protein.	UBX domain-containing protein.	0.835
EIP91_010178	EIP91_010981	A0A4V2MX40	A0A4R0RMS8	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.465
EIP91_010178	EIP91_012320	A0A4V2MX40	A0A4R0RNC1	Uncharacterized protein.	CUE domain-containing protein.	0.898
EIP91_010981	EIP91_010178	A0A4R0RMS8	A0A4V2MX40	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.465