STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF02953.1Thrombospondin-1 precursor. (1410 aa)    
Predicted Functional Partners:
AKF10813.1
Internalin.
  
     0.769
AKF04635.1
Internalin.
  
     0.756
AKF09199.1
OmpA domain protein.
  
 
   0.748
AKF05772.1
Flagellar motor rotation protein MotB.
  
 
   0.726
AKF10147.1
Cell surface calcium-binding acidic-repeat protein.
  
     0.714
AKF10687.1
Internalin.
  
     0.690
AKF05004.1
Lysyl oxidase.
  
     0.680
AKF06611.1
Calcium-binding acidic-repeat protein.
  
     0.680
AKF09294.1
PKD domain protein.
  
     0.656
AKF09213.1
OmpA domain protein.
  
 
   0.578
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.