STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF03233.1Radical SAM domain heme biosynthesis protein. (1070 aa)    
Predicted Functional Partners:
AKF03236.1
Radical SAM domain protein.
 
     0.856
AKF10797.1
Hypothetical protein.
  
     0.766
AKF06976.1
Radical SAM domain heme biosynthesis protein.
  
     0.754
AKF09433.1
Tryptophan synthase alpha chain.
  
     0.743
AKF02990.1
Hypothetical protein.
  
    0.741
AKF03235.1
Molybdenum cofactor biosynthesis protein MoaA.
 
    
0.721
AKF09359.1
Microbial collagenase secreted protein.
  
     0.719
AKF09344.1
Multiple EGF-like-domain protein 3 precursor.
  
     0.718
AKF03105.1
Tryptophan synthase alpha chain.
  
    0.692
AKF07340.1
Fatty acid desaturase.
  
     0.689
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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