STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF03912.1General secretion pathway protein C. (326 aa)    
Predicted Functional Partners:
AKF03913.1
General secretion pathway protein D.
 
 
 0.984
AKF03921.1
Hypothetical protein.
 
  
 0.887
AKF03920.1
General secretion pathway protein J.
 
  
 0.883
AKF11661.1
Type II/IV secretion system secretin RcpA/CpaC; Belongs to the bacterial secretin family.
 
 
 0.854
AKF03915.1
Type IV fimbrial assembly protein PilC.
  
  
 0.789
AKF03922.1
General secretion pathway protein L.
 
   
 0.786
AKF03917.1
General secretion pathway protein G.
 
  
 0.783
AKF03914.1
Type IV fimbrial assembly, ATPase PilB.
  
  
 0.760
AKF07060.1
TPR domain protein, putative component of TonB system.
  
     0.753
AKF06445.1
Putative abductin-like protein.
  
     0.733
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.