STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF04075.1Vanillate O-demethylase oxygenase subunit. (375 aa)    
Predicted Functional Partners:
AKF04074.1
Oxidoreductase.
       0.773
AKF10797.1
Hypothetical protein.
  
     0.661
AKF04076.1
Pyridoxal phosphate-dependent deaminase, putative.
     
 0.568
AKF09500.1
Lignostilbene-alpha,beta-dioxygenase.
  
   
 0.556
AKF02990.1
Hypothetical protein.
  
     0.555
AKF03305.1
Lignostilbene-alpha,beta-dioxygenase.
  
   
 0.539
AKF03106.1
Tryptophan synthase alpha chain.
  
     0.530
AKF02991.1
Tryptophan synthase alpha chain.
  
     0.525
AKF07357.1
HEAT repeat protein.
  
     0.512
AKF03105.1
Tryptophan synthase alpha chain.
  
     0.511
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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