STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF05909.1Transcriptional regulator, AraC family protein. (157 aa)    
Predicted Functional Partners:
AKF05910.1
Lactoylglutathione lyase.
 
     0.925
AKF05911.1
Hypothetical protein.
       0.773
AKF05214.1
Transcriptional regulator, AraC family protein.
  
     0.769
AKF09697.1
DNA-binding response regulator, AraC family.
  
     0.762
AKF04492.1
Transcriptional regulator, AraC family protein.
  
   0.760
AKF11083.1
Transcriptional regulator, AraC family protein.
  
     0.758
AKF07516.1
Transcriptional regulator, AraC family protein.
  
     0.757
AKF04467.1
Transcriptional regulator.
  
   0.711
AKF03532.1
Transcriptional regulator, AraC family protein.
  
     0.673
AKF03079.1
Transcriptional regulator, AraC family protein.
  
     0.665
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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