STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF06776.1Outer membrane autotransporter barrel. (508 aa)    
Predicted Functional Partners:
AKF07921.1
Hypothetical protein.
  
     0.774
AKF06167.1
Tryptophan synthase alpha chain.
  
     0.766
AKF07469.1
Hypothetical protein.
  
     0.752
AKF05004.1
Lysyl oxidase.
  
     0.750
AKF10513.1
Tryptophan synthase alpha chain.
 
     0.744
AKF03980.1
DNA polymerase III subunits gamma and tau.
  
     0.739
AKF04491.1
Tryptophan synthase alpha chain.
  
     0.721
AKF07739.1
Glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
  
     0.715
AKF05247.1
Hypothetical protein.
  
     0.712
AKF10464.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.