STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF06926.1RNA polymerase sigma factor for flagellar operon; Belongs to the sigma-70 factor family. (220 aa)    
Predicted Functional Partners:
AKF07799.1
Flagellar biosynthesis protein FliQ.
 
  
 0.952
AKF11301.1
Flagellum-specific ATP synthase FliI.
 
 
 0.945
AKF07843.1
Flagellar biosynthesis protein FlhA.
 
  
 0.932
AKF04532.1
Flagellar biosynthesis protein FlhB.
 
  
 0.912
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.905
AKF05987.1
Methyl-accepting chemotaxis protein.
 
  
 0.887
AKF11033.1
Flagellar motor rotation protein MotB.
 
  
 0.887
AKF05606.1
Flagellar motor rotation protein MotB.
 
  
 0.883
AKF10679.1
Type III secretion inner membrane protein.
  
  
 0.865
AKF05584.1
Hypothetical protein.
  
  
 0.855
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.