STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF08265.1N-acetylmuramoyl-L-alanine amidase. (781 aa)    
Predicted Functional Partners:
AKF08540.1
Putative peptidase.
 
   
 0.786
AKF08266.1
Tryptophan synthase alpha chain.
 
    
0.775
AKF04731.1
Peptidase M23B.
  
     0.774
AKF07593.1
Peptidase M23B.
  
     0.774
AKF06633.1
Putative peptidase.
  
     0.773
AKF11721.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.772
AKF06114.1
Peptidase.
  
     0.762
AKF05326.1
Multimodular transpeptidase-transglycosylase.
  
   
 0.576
AKF08267.1
Hypothetical protein.
       0.544
AKF08263.1
L-sorbosone dehydrogenase.
       0.537
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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