STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF08405.1Polyhydroxyalkanoic acid synthase. (374 aa)    
Predicted Functional Partners:
AKF08406.1
Phosphocarrier protein kinase/phosphorylase.
       0.773
AKF08404.1
Hypothetical protein.
       0.628
AKF06006.1
Tryptophan synthase alpha chain.
  
     0.614
AKF07722.1
Tryptophan synthase alpha chain.
  
     0.609
AKF09183.1
Tryptophan synthase alpha chain.
  
     0.573
AKF07036.1
Hypothetical protein.
  
     0.558
AKF08966.1
Hypothetical protein.
  
     0.552
AKF09230.1
Internalin.
  
     0.550
AKF08407.1
Hypothetical protein.
       0.538
rsmG
rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.538
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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