STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHLSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family. (49 aa)    
Predicted Functional Partners:
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.993
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
rpsT
SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.
  
 
 0.985
rpmF
Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.983
rpsP
SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.983
AKF10630.1
SSU ribosomal protein S14p (S29e).
  
 
 0.983
rpmI
LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.982
rpsU
SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.982
rpmJ
LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.982
rpsO
SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.981
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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