STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF09841.1Response regulator of zinc sigma-54-dependent two-component system. (441 aa)    
Predicted Functional Partners:
AKF07544.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.760
AKF10679.1
Type III secretion inner membrane protein.
  
 
 0.755
AKF08224.1
Flagellar assembly protein FliH.
  
 
 0.679
AKF11301.1
Flagellum-specific ATP synthase FliI.
  
 
 0.608
AKF05696.1
Putative SigmaB asociated two-component system sensor protein.
  
 
 0.569
AKF09840.1
Hypothetical protein.
       0.561
AKF04753.1
Signal transduction histidine kinase CheA.
  
 
 0.520
AKF05988.1
Signal transduction histidine kinase CheA.
  
 
 0.520
AKF07305.1
Signal transduction histidine kinase CheA.
  
 
 0.520
AKF07878.1
Flagellar synthesis regulator FleN.
  
 
 0.501
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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