STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF10792.1Phage tail assembly-like protein. (198 aa)    
Predicted Functional Partners:
AKF10793.1
Tryptophan synthase alpha chain.
       0.773
AKF10794.1
dCMP deaminase.
  
    0.755
AKF04787.1
Hypothetical protein.
 
   
 0.748
AKF06749.1
Hypothetical protein.
  
     0.699
AKF06750.1
Retron-type RNA-directed DNA polymerase.
  
     0.687
AKF09218.1
Retron-type RNA-directed DNA polymerase.
  
     0.687
AKF11117.1
Hypothetical protein.
 
     0.680
AKF09216.1
Hypothetical protein.
  
     0.673
AKF10790.1
Hypothetical protein.
       0.636
aceK
Isocitrate dehydrogenase phosphatase; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.
       0.636
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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