STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF11280.1Outer membrane receptor protein. (799 aa)    
Predicted Functional Partners:
AKF04881.1
TonB family protein / TonB-dependent receptor.
 
 
 0.936
AKF05638.1
TonB family protein / TonB-dependent receptor.
 
 
 0.922
AKF09916.1
TonB family protein / TonB-dependent receptor.
 
 
0.902
AKF09494.1
TonB-dependent receptor.
 
 
 0.849
AKF03332.1
TolR-like protein.
 
 
 0.802
AKF11279.1
Hypothetical protein.
       0.785
AKF11278.1
Putative lipoprotein.
       0.773
AKF09336.1
TonB family protein / TonB-dependent receptor.
 
 
 0.752
AKF03297.1
TonB-dependent receptor.
 
 
 0.751
AKF03333.1
Adventurous gliding motility protein S.
 
 
 0.749
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.