STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF11431.1phi-Carotenoid synthase. (525 aa)    
Predicted Functional Partners:
AKF11430.1
CrtT-methyltransferase-like protein.
     0.963
AKF08031.1
Lycopene beta cyclase.
 
  
 0.924
AKF08030.1
phi-Carotenoid synthase.
  
  
 
0.905
AKF11429.1
Phytoene synthase.
 
   
 0.834
AKF11433.1
CrtV-methyltransferase-like protein.
 
     0.823
AKF10534.1
Hypothetical protein.
  
     0.582
AKF11432.1
Hypothetical protein.
       0.561
AKF11426.1
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
       0.540
AKF11427.1
Maltose/maltodextrin ABC transporter, permease protein MalG.
       0.540
AKF11428.1
Maltose/maltodextrin ABC transporter, permease protein MalF.
       0.540
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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