STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKF11536.1Response regulator of zinc sigma-54-dependent two-component system. (479 aa)    
Predicted Functional Partners:
AKF11535.1
Osmosensitive K+ channel histidine kinase KdpD.
 
 
 0.985
AKF10811.1
Flagellar regulatory protein FleQ.
  
  
 
0.909
AKF07544.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.904
AKF11537.1
Hypothetical protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
       0.576
AKF11534.1
Sulfate permease.
       0.492
AKF05987.1
Methyl-accepting chemotaxis protein.
  
 
 0.490
AKF04753.1
Signal transduction histidine kinase CheA.
  
 
 0.466
AKF05988.1
Signal transduction histidine kinase CheA.
  
 
0.466
AKF07305.1
Signal transduction histidine kinase CheA.
  
 
 0.466
AKF11533.1
Hypothetical protein.
       0.466
Your Current Organism:
Sandaracinus amylolyticus
NCBI taxonomy Id: 927083
Other names: DSM 53668, NCCB 100362, S. amylolyticus, Sandaracinus amylolyticus Mohr et al. 2012, Sorangiineae bacterium NOSO 4, strain NOSO-4
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